PH01001902G0320's details annotation
1.Annotation
ICBR annotation: fiber protein Fb14, putative
Blast result AT3G62790 : 9.70E-37
Blast annotation: NADH-ubiquinone oxidoreductase-related
2.Location
Scaffold: PH01001902
Strand: -
| Region | Start | End |
| gene | 206875 | 210396 |
| mRNA | 206875 | 210396 |
| exon | 206875 | 207720 |
| exon | 209803 | 210396 |
| CDS | 207610 | 207720 |
| CDS | 209803 | 209952 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000983 | Oxidative_phosphorylation |
| coexpression network | CFinderM000984 | proteasome core complex, threonine-type endopeptidase activity, endopeptidase activity, proteolysis involved in cellular protein catabolic process, Proteasome thiol oxidase activity, proteasome core complex, alpha-subunit complex, Oxidative_phosphorylation |
| coexpression network | CFinderM001065 | threonine-type endopeptidase activity, endopeptidase activity, proteasome core complex, proteolysis involved in cellular protein catabolic process, Proteasome thiol oxidase activity, Protein_processing_in_endoplasmic_reticulum proteasome core complex, alpha-subunit complex, Retinol_metabolism |
| coexpression network | CFinderM001265 | proteolysis involved in cellular protein catabolic process, proteasome core complex, C3H Transcription_Regulator(from PlantTFDB) Proteasome Oxidative_phosphorylation endopeptidase activity, threonine-type endopeptidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10200.8 | Ndufs5 | 11 | 66 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Oxidative phosphorylation | NADH dehydrogenase (ubiquinone) Fe-S protein 5 [EC:1.6.5.3;EC:1.6.99.3] | ko00190 | K03938 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.