PH01001903G0390's details annotation
1.Annotation
ICBR annotation: zinc finger, C3HC4 type domain containing protein, expressed
Blast result AT3G05545 : 7.90E-41
Blast annotation: RING/U-box superfamily protein
2.Location
Scaffold: PH01001903
Strand: +
| Region | Start | End |
| gene | 256661 | 264849 |
| mRNA | 256661 | 264849 |
| exon | 256661 | 258212 |
| exon | 259734 | 259808 |
| exon | 260066 | 260143 |
| exon | 261209 | 261396 |
| exon | 261910 | 261968 |
| exon | 262576 | 262604 |
| exon | 262685 | 263081 |
| exon | 264252 | 264849 |
| CDS | 258044 | 258212 |
| CDS | 259734 | 259808 |
| CDS | 260066 | 260143 |
| CDS | 261209 | 261396 |
| CDS | 261910 | 261968 |
| CDS | 262576 | 262604 |
| CDS | 262685 | 263081 |
| CDS | 264252 | 264789 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000862 | DBP Transcription_Regulator(from iTAK) Golgi stack, GPI-anchor transamidase complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.