PH01001911G0050's details annotation
1.Annotation
ICBR annotation: sex determination protein tasselseed-2, putative, expressed
Blast result AT3G26770 : 6.20E-65
Blast annotation: NAD(P)-binding Rossmann-fold superfamily protein
2.Location
Scaffold: PH01001911
Strand: +
| Region | Start | End |
| gene | 37539 | 40422 |
| mRNA | 37539 | 40422 |
| exon | 37539 | 38051 |
| exon | 39307 | 40422 |
| CDS | 37984 | 38051 |
| CDS | 39307 | 40087 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001071 | GH18 Glycoside_Hydrolases Amino_sugar_and_nucleotide_sugar_metabolism hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, nitrogen compound metabolic process, cellular protein modification process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13561.5 | adh_short_C2 | 33 | 271 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016491 | oxidoreductase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.