PH01001914G0110's details annotation
1.Annotation
ICBR annotation: homeobox and START domains containing protein, putative, expressed
Blast result AT1G05230 : 0.00E+00
Blast annotation: homeodomain GLABROUS 2
2.Location
Scaffold: PH01001914
Strand: +
| Region | Start | End |
| gene | 94878 | 100520 |
| mRNA | 94878 | 100520 |
| exon | 94878 | 95066 |
| exon | 96108 | 96367 |
| exon | 96850 | 96967 |
| exon | 97477 | 97665 |
| exon | 97785 | 98240 |
| exon | 98325 | 98426 |
| exon | 98622 | 98822 |
| exon | 98953 | 99166 |
| exon | 99279 | 99550 |
| exon | 99635 | 99730 |
| exon | 99821 | 100520 |
| CDS | 95001 | 95066 |
| CDS | 96108 | 96367 |
| CDS | 96850 | 96967 |
| CDS | 97477 | 97665 |
| CDS | 97785 | 98240 |
| CDS | 98325 | 98426 |
| CDS | 98622 | 98822 |
| CDS | 98953 | 99166 |
| CDS | 99279 | 99550 |
| CDS | 99635 | 99730 |
| CDS | 99821 | 100204 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HB-HD-ZIP |
| Transcription_Regulator(from PlantTFDB) | HD-ZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00046.28 | Homeobox | 93 | 148 |
| PF01852.18 | START | 287 | 520 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.