Annotation of co-expression genes

PH01001933G0270's details annotation

1.Annotation

ICBR annotation: pentatricopeptide, putative, expressed

Blast result AT2G18940 : 0.00E+00
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein

2.Location

Scaffold: PH01001933
Strand: +

RegionStartEnd
gene191448204960
mRNA191448204960
exon191448193044
exon195708195757
exon195909196021
exon196823197102
exon197304197433
exon197551197828
exon197943198039
exon198143198212
exon199086199290
exon202319204960
CDS192444193044
CDS195708195757
CDS195909196021
CDS196823197102
CDS197304197433
CDS197551197828
CDS197943198039
CDS198143198212
CDS199086199290
CDS202319204424

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000060GT1 GlycosylTransferases
coexpression networkCFinderM000604photosynthesis,_light_harvesting
Photosynthesis_-_antenna_proteins
membrane,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13812.5PPR_3694743
PF13812.5PPR_3790847
PF13812.5PPR_3860919
PF13041.5PPR_2940987
PF13041.5PPR_210101059
PF13812.5PPR_311051163
PF12854.6PPR_111831213
PF13041.5PPR_212201269

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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