PH01001938G0210's details annotation
1.Annotation
ICBR annotation: ABC transporter, ATP-binding protein, putative, expressed
Blast result AT5G60790 : 1.00E-180
Blast annotation: ABC transporter family protein
2.Location
Scaffold: PH01001938
Strand: +
| Region | Start | End |
| gene | 139019 | 142708 |
| mRNA | 139019 | 142708 |
| exon | 139019 | 139681 |
| exon | 141059 | 142708 |
| CDS | 139615 | 139681 |
| CDS | 141059 | 142110 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001297 | PLATZ Transcription_Regulator(from iTAK) translational termination, iron-sulfur cluster assembly, mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12848.6 | ABC_tran_Xtn | 59 | 139 |
| PF00005.26 | ABC_tran | 175 | 306 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0005524 | ATP binding |
| GO:0016887 | ATPase activity |
| GO:0017111 | nucleoside-triphosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.