PH01001941G0300's details annotation
1.Annotation
ICBR annotation: calreticulin precursor protein, putative, expressed
Blast result AT5G61790 : 2.00E-168
Blast annotation: calnexin 1
2.Location
Scaffold: PH01001941
Strand: -
| Region | Start | End |
| gene | 200113 | 203724 |
| mRNA | 200113 | 203724 |
| exon | 200113 | 200785 |
| exon | 200868 | 200984 |
| exon | 201083 | 201154 |
| exon | 201258 | 202261 |
| exon | 202926 | 202995 |
| exon | 203090 | 203724 |
| CDS | 200636 | 200785 |
| CDS | 200868 | 200984 |
| CDS | 201083 | 201154 |
| CDS | 201258 | 202261 |
| CDS | 202926 | 202995 |
| CDS | 203090 | 203158 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000387 | double-strand break repair, DNA metabolic process, endoplasmic reticulum, |
| coexpression network | CFinderM001366 | sulfur compound metabolic process, endoplasmic reticulum, phosphatidylinositol phosphorylation, 3'(2'),5'-bisphosphate nucleotidase activity, RLK-Pelle_DLSV (from iTAK) Phosphatidylinositol_signaling_system Inositol_phosphate_metabolism Sulfur_metabolism |
| coexpression network | CFinderM001739 | mannose biosynthetic process, phosphomannomutase activity, ARF Transcription_Regulator(from PlantTFDB) SNF2 Transcription_Regulator(from iTAK) B3-ARF Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00262.17 | Calreticulin | 31 | 339 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | calnexin | ko04141 | K08054 |
| Phagosome | calnexin | ko04145 | K08054 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005509 | calcium ion binding |
| GO:0005515 | protein binding |
| GO:0005783 | endoplasmic reticulum |
| GO:0006457 | protein folding |
| GO:0051082 | unfolded protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.