PH01001942G0200's details annotation
1.Annotation
ICBR annotation: phosphoglycerate mutase, putative, expressed
Blast result AT4G38370 : 4.60E-40
Blast annotation: Phosphoglycerate mutase family protein
2.Location
Scaffold: PH01001942
Strand: +
| Region | Start | End |
| gene | 185222 | 190268 |
| mRNA | 185222 | 190268 |
| exon | 185222 | 186066 |
| exon | 186180 | 186260 |
| exon | 186368 | 186496 |
| exon | 187507 | 187569 |
| exon | 188662 | 190268 |
| CDS | 185950 | 186066 |
| CDS | 186180 | 186260 |
| CDS | 186368 | 186496 |
| CDS | 187507 | 187569 |
| CDS | 188662 | 188709 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000009 | ubiquitin thiolesterase activity, Oxidative_phosphorylation ubiquitin-dependent protein catabolic process, |
| coexpression network | CFinderM000657 | vesicle docking involved in exocytosis, Oxidative_phosphorylation Endocytosis nucleosome, vesicle-mediated transport, nucleosome assembly, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00300.21 | His_Phos_1 | 20 | 126 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.