PH01001945G0340's details annotation
1.Annotation
ICBR annotation: CSLF1 - cellulose synthase-like family F
Blast result AT5G16910 : 0
Blast annotation: cellulose-synthase like D2
2.Location
Scaffold: PH01001945
Strand: +
| Region | Start | End |
| gene | 270863 | 273639 |
| mRNA | 270863 | 273639 |
| exon | 270863 | 271502 |
| exon | 271598 | 273639 |
| CDS | 270969 | 271502 |
| CDS | 271598 | 273175 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000136 | CPP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03552.13 | Cellulose_synt | 10 | 341 |
| PF03552.13 | Cellulose_synt | 351 | 666 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
| GO:0016760 | cellulose synthase (UDP-forming) activity |
| GO:0030244 | cellulose biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.