Annotation of co-expression genes

PH01001947G0400's details annotation

1.Annotation

ICBR annotation: NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed

Blast result AT4G02580 : 9.00E-114
Blast annotation: NADH-ubiquinone oxidoreductase 24 kDa subunit, putative

2.Location

Scaffold: PH01001947
Strand: +

RegionStartEnd
gene263464267247
mRNA263464267247
exon263464263562
exon263653263727
exon263821263886
exon264281264397
exon265538265615
exon265703265808
exon265951265997
exon266191266268
exon267115267247
CDS263464263562
CDS263653263727
CDS263821263886
CDS264281264397
CDS265538265615
CDS265703265808
CDS265951265997
CDS266191266268
CDS267115267222

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001535TAZ Transcription_Regulator(from iTAK)
transcription cofactor activity,
histone acetyltransferase activity,
Oxidative_phosphorylation
peptidyl-prolyl cis-trans isomerase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01257.182Fe-2S_thioredx81237

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Oxidative phosphorylationNADH dehydrogenase (ubiquinone) flavoprotein 2 [EC:1.6.5.3;EC:1.6.99.3]ko00190K03943

10.Gene Ontology

GO AccessionGO Annotation
GO:0016491oxidoreductase activity
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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