Annotation of co-expression genes

PH01001948G0190's details annotation

1.Annotation

ICBR annotation: xa21, putative

Blast result AT3G47110 : 8.00E-146
Blast annotation: Leucine-rich repeat protein kinase family protein

2.Location

Scaffold: PH01001948
Strand: -

RegionStartEnd
gene165310173353
mRNA165310173353
exon165310165781
exon166870166978
exon167049167843
exon167987169738
exon170675170771
exon171942172299
exon172935173353
CDS165502165781
CDS166870166978
CDS167049167843
CDS167987169738
CDS170675170771
CDS171942172299
CDS172935173050

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000251RLK-Pelle_LRR-XII-1 (from iTAK)
endoplasmic reticulum,
WRKY Transcription_Regulator(from PlantTFDB)
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen,
lipoxygenase activity,
protein binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08263.11LRRNT_2200238
PF00069.24Pkinase8631067

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.