PH01001953G0100's details annotation
1.Annotation
ICBR annotation: armadillo/beta-catenin-like repeat family protein, expressed
Blast result AT1G51350 : 8.80E-26
Blast annotation: ARM repeat superfamily protein
2.Location
Scaffold: PH01001953
Strand: -
| Region | Start | End |
| gene | 46772 | 50420 |
| mRNA | 46772 | 50420 |
| exon | 46772 | 47836 |
| exon | 48070 | 48231 |
| exon | 48312 | 48596 |
| exon | 49235 | 50420 |
| CDS | 47688 | 47836 |
| CDS | 48070 | 48231 |
| CDS | 48312 | 48596 |
| CDS | 49235 | 49595 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000033 | galactonolactone_dehydrogenase_activity |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00514.22 | Arm | 155 | 189 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.