PH01001954G0030's details annotation
1.Annotation
ICBR annotation: AT-rich interaction region, putative, expressed
Blast result AT3G43240 : 0.00E+00
Blast annotation: ARID/BRIGHT DNA-binding domain-containing protein
2.Location
Scaffold: PH01001954
Strand: +
| Region | Start | End |
| gene | 11186 | 22304 |
| mRNA | 11186 | 22304 |
| exon | 11186 | 14042 |
| exon | 14099 | 14312 |
| exon | 16618 | 16671 |
| exon | 17076 | 17164 |
| exon | 17252 | 17504 |
| exon | 18479 | 18510 |
| exon | 18976 | 19111 |
| exon | 19196 | 19369 |
| exon | 20171 | 20617 |
| exon | 20862 | 20999 |
| exon | 21098 | 21196 |
| exon | 21452 | 21552 |
| exon | 21644 | 21734 |
| exon | 21833 | 22304 |
| CDS | 13909 | 14042 |
| CDS | 14099 | 14312 |
| CDS | 16618 | 16671 |
| CDS | 17076 | 17164 |
| CDS | 17252 | 17504 |
| CDS | 18479 | 18510 |
| CDS | 18976 | 19111 |
| CDS | 19196 | 19369 |
| CDS | 20171 | 20617 |
| CDS | 20862 | 20999 |
| CDS | 21098 | 21196 |
| CDS | 21452 | 21552 |
| CDS | 21644 | 21734 |
| CDS | 21833 | 21967 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000332 | ARID Transcription_Regulator(from iTAK) nucleosome assembly, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | ARID |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01388.20 | ARID | 512 | 608 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005622 | intracellular |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.