PH01001955G0010's details annotation
1.Annotation
ICBR annotation: 50S ribosomal protein L21, chloroplast precursor, putative, expressed
Blast result AT1G35680 : 3.90E-39
Blast annotation: Ribosomal protein L21
2.Location
Scaffold: PH01001955
Strand: +
| Region | Start | End |
| gene | 53 | 4552 |
| mRNA | 53 | 4552 |
| exon | 53 | 271 |
| exon | 576 | 611 |
| exon | 2364 | 2546 |
| exon | 2999 | 3079 |
| exon | 3670 | 3771 |
| exon | 3855 | 3929 |
| exon | 4055 | 4552 |
| CDS | 53 | 271 |
| CDS | 576 | 611 |
| CDS | 2364 | 2546 |
| CDS | 2999 | 3079 |
| CDS | 3670 | 3771 |
| CDS | 3855 | 3929 |
| CDS | 4055 | 4138 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00829.20 | Ribosomal_L21p | 142 | 242 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L21 | ko03011 | K02888 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.