PH01001955G0150's details annotation
1.Annotation
ICBR annotation: extra-large G-protein-related, putative, expressed
Blast result AT3G61670 : 3.20E-86
Blast annotation: Protein of unknown function (DUF3133)
2.Location
Scaffold: PH01001955
Strand: +
| Region | Start | End |
| gene | 110130 | 116770 |
| mRNA | 110130 | 116770 |
| exon | 110130 | 111017 |
| exon | 112645 | 114709 |
| exon | 114828 | 114888 |
| exon | 114960 | 115183 |
| exon | 115276 | 115333 |
| exon | 116099 | 116770 |
| CDS | 110846 | 111017 |
| CDS | 112645 | 114709 |
| CDS | 114828 | 114888 |
| CDS | 114960 | 115183 |
| CDS | 115276 | 115333 |
| CDS | 116099 | 116254 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001052 | RLK-Pelle_Extensin (from iTAK) CMGC_GSK (from iTAK) Endocytosis multicellular organismal development, regulation of ARF GTPase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF11331.7 | zinc_ribbon_12 | 453 | 497 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.