PH01001956G0200's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G39160 : 4.70E-34
Blast annotation: Homeodomain-like superfamily protein
2.Location
Scaffold: PH01001956
Strand: +
| Region | Start | End |
| gene | 146507 | 156597 |
| mRNA | 146507 | 156597 |
| exon | 146507 | 149258 |
| exon | 149356 | 149446 |
| exon | 152856 | 153115 |
| exon | 153243 | 153750 |
| exon | 153832 | 153932 |
| exon | 154019 | 154059 |
| exon | 154891 | 155074 |
| exon | 155206 | 155350 |
| exon | 155447 | 155562 |
| exon | 155643 | 156597 |
| CDS | 148191 | 149258 |
| CDS | 149356 | 149446 |
| CDS | 152856 | 153115 |
| CDS | 153243 | 153750 |
| CDS | 153832 | 153932 |
| CDS | 154019 | 154059 |
| CDS | 154891 | 155074 |
| CDS | 155206 | 155350 |
| CDS | 155447 | 155562 |
| CDS | 155643 | 155786 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | MYB-related |
| Transcription_Regulator(from PlantTFDB) | MYB_related |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF15963.4 | Myb_DNA-bind_7 | 731 | 812 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.