PH01001969G0040's details annotation
1.Annotation
ICBR annotation: aldehyde dehydrogenase, putative, expressed
Blast result AT1G44170 : 2.00E-176
Blast annotation: aldehyde dehydrogenase 3H1
2.Location
Scaffold: PH01001969
Strand: +
| Region | Start | End |
| gene | 27443 | 32379 |
| mRNA | 27443 | 32379 |
| exon | 27443 | 27782 |
| exon | 28942 | 29010 |
| exon | 29092 | 29188 |
| exon | 29819 | 30025 |
| exon | 30218 | 30333 |
| exon | 30416 | 30520 |
| exon | 30605 | 30777 |
| exon | 30867 | 30957 |
| exon | 31426 | 31575 |
| exon | 31664 | 32379 |
| CDS | 27591 | 27782 |
| CDS | 28942 | 29010 |
| CDS | 29092 | 29188 |
| CDS | 29819 | 30025 |
| CDS | 30218 | 30333 |
| CDS | 30416 | 30520 |
| CDS | 30605 | 30777 |
| CDS | 30867 | 30957 |
| CDS | 31426 | 31575 |
| CDS | 31664 | 31909 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000618 | TKL-Pl-4 (from iTAK) Valine,_leucine_and_isoleucine_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00171.21 | Aldedh | 2 | 434 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Lysine degradation | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00310 | K00128 |
| Arginine and proline metabolism | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00330 | K00128 |
| Histidine metabolism | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00340 | K00128 |
| Tryptophan metabolism | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00380 | K00128 |
| beta-Alanine metabolism | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00410 | K00128 |
| Limonene and pinene degradation | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00903 | K00128 |
| Chloroalkane and chloroalkene degradation | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00625 | K00128 |
| Glycolysis / Gluconeogenesis | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00010 | K00128 |
| Pentose and glucuronate interconversions | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00040 | K00128 |
| Ascorbate and aldarate metabolism | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00053 | K00128 |
| Pyruvate metabolism | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00620 | K00128 |
| Propanoate metabolism | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00640 | K00128 |
| Fatty acid metabolism | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko01212 | K00128 |
| Glycerolipid metabolism | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | ko00561 | K00128 |
| 305 Valine, leucine and isoleucine degradation | aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | K00128 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004030 | aldehyde dehydrogenase [NAD(P)+] activity |
| GO:0006081 | cellular aldehyde metabolic process |
| GO:0008152 | metabolic process |
| GO:0016491 | oxidoreductase activity |
| GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.