PH01001969G0120's details annotation
1.Annotation
ICBR annotation: POLD1 - Putative DNA polymerase delta catalytic subunit, expressed
Blast result AT5G63960 : 1.00E-104
Blast annotation: DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases
2.Location
Scaffold: PH01001969
Strand: -
| Region | Start | End |
| gene | 75033 | 78353 |
| mRNA | 75033 | 78353 |
| exon | 75033 | 75446 |
| exon | 75589 | 75730 |
| exon | 75965 | 76124 |
| exon | 76223 | 76329 |
| exon | 76412 | 76522 |
| exon | 77665 | 78353 |
| CDS | 75287 | 75446 |
| CDS | 75589 | 75730 |
| CDS | 75965 | 76124 |
| CDS | 76223 | 76329 |
| CDS | 76412 | 76522 |
| CDS | 77665 | 78058 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03104.18 | DNA_pol_B_exo1 | 166 | 353 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0003887 | DNA-directed DNA polymerase activity |
| GO:0006260 | DNA replication |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.