PH01001972G0090's details annotation
1.Annotation
ICBR annotation: ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
Blast result AT4G01037 : 5.80E-31
Blast annotation: Ubiquitin carboxyl-terminal hydrolase family protein
2.Location
Scaffold: PH01001972
Strand: +
| Region | Start | End |
| gene | 43477 | 45989 |
| mRNA | 43477 | 45989 |
| exon | 43477 | 44059 |
| exon | 44912 | 45989 |
| CDS | 43535 | 44059 |
| CDS | 44912 | 45406 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000289 | RLK-Pelle_LRR-XI-1 (from iTAK) glycogen biosynthetic process, Starch_and_sucrose_metabolism Amino_sugar_and_nucleotide_sugar_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF11955.7 | PORR | 191 | 308 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.