PH01001974G0250's details annotation
1.Annotation
ICBR annotation: Os6bglu24 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed
Blast result AT1G02850 : 1.60E-69
Blast annotation: beta glucosidase 11
2.Location
Scaffold: PH01001974
Strand: +
| Region | Start | End |
| gene | 165493 | 175804 |
| mRNA | 165493 | 175804 |
| exon | 165493 | 165692 |
| exon | 165776 | 165845 |
| exon | 167246 | 167691 |
| exon | 170781 | 170871 |
| exon | 171505 | 171563 |
| exon | 171648 | 171723 |
| exon | 172010 | 172087 |
| exon | 172194 | 172281 |
| exon | 172425 | 172680 |
| exon | 174398 | 174451 |
| exon | 174573 | 174675 |
| exon | 174745 | 174853 |
| exon | 174946 | 175804 |
| CDS | 165558 | 165692 |
| CDS | 165776 | 165845 |
| CDS | 167246 | 167691 |
| CDS | 170781 | 170871 |
| CDS | 171505 | 171563 |
| CDS | 171648 | 171723 |
| CDS | 172010 | 172087 |
| CDS | 172194 | 172281 |
| CDS | 172425 | 172680 |
| CDS | 174398 | 174451 |
| CDS | 174573 | 174675 |
| CDS | 174745 | 174853 |
| CDS | 174946 | 175114 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000053 | CMGC_DYRK-PRP4 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00232.17 | Glyco_hydro_1 | 28 | 67 |
| PF00232.17 | Glyco_hydro_1 | 246 | 433 |
| PF00232.17 | Glyco_hydro_1 | 446 | 575 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.