PH01001978G0130's details annotation
1.Annotation
ICBR annotation: WRKY DNA-binding domain containing protein, expressed
Blast result AT2G03340 : 2.40E-44
Blast annotation: WRKY DNA-binding protein 3
2.Location
Scaffold: PH01001978
Strand: +
| Region | Start | End |
| gene | 74560 | 77564 |
| mRNA | 74560 | 77564 |
| exon | 74560 | 75616 |
| exon | 76370 | 77088 |
| exon | 77161 | 77283 |
| exon | 77367 | 77564 |
| CDS | 75329 | 75616 |
| CDS | 76370 | 77088 |
| CDS | 77161 | 77283 |
| CDS | 77367 | 77397 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000119 | |
| coexpression network | CFinderM000268 | WRKY Transcription_Regulator(from PlantTFDB) RLK-Pelle_LRR-II (from iTAK) mTERF Transcription_Regulator(from iTAK) RLK-Pelle_SD-2b (from iTAK) RNA-dependent DNA replication, regulation of transcription, DNA-dependent, |
| coexpression network | CFinderM000406 | WRKY Transcription_Regulator(from PlantTFDB) GH32 Glycoside_Hydrolases RLK-Pelle_LRR-II (from iTAK) beta-fructofuranosidase_activity sucrose_alpha-glucosidase_activity mTERF Transcription_Regulator(from iTAK) Galactose_metabolism Protein_export Sphingolipid_metabolism sequence-specific DNA binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | WRKY |
| Transcription_Regulator(from PlantTFDB) | WRKY |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03106.14 | WRKY | 188 | 243 |
| PF03106.14 | WRKY | 357 | 378 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.