Annotation of co-expression genes

PH01001979G0300's details annotation

1.Annotation

ICBR annotation: WD40-like Beta Propeller Repeat family protein, expressed

Blast result AT1G21680 : 2.30E-47
Blast annotation: DPP6 N-terminal domain-like protein

2.Location

Scaffold: PH01001979
Strand: -

RegionStartEnd
gene179867183677
mRNA179867183677
exon179867181276
exon181479181677
exon181793181975
exon182479182806
exon183081183677
CDS180768181276
CDS181479181677
CDS181793181975
CDS182479182806
CDS183081183613

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000904IWS1 Transcription_Regulator(from iTAK)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
Steroid_biosynthesis
GPI anchor metabolic process,
coexpression networkCFinderM001533RLK-Pelle_LRR-Xa (from iTAK)
cytochrome b6f complex,
Ubiquinone_and_other_terpenoid-quinone_biosynthesis
translation,
cation binding,
structural constituent of ribosome,
alpha-amylase activity,
large ribosomal subunit,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07676.11PD40316329
PF07676.11PD40451463
PF07676.11PD40510525

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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