PH01001979G0320's details annotation
1.Annotation
ICBR annotation: tetratricopeptide-like helical, putative, expressed
Blast result AT3G22690 : 6.00E-100
Blast annotation: -
2.Location
Scaffold: PH01001979
Strand: -
| Region | Start | End |
| gene | 191854 | 194350 |
| mRNA | 191854 | 194350 |
| exon | 191854 | 194350 |
| CDS | 192239 | 194185 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001327 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 170 | 199 |
| PF01535.19 | PPR | 204 | 229 |
| PF01535.19 | PPR | 232 | 261 |
| PF12854.6 | PPR_1 | 330 | 358 |
| PF13041.5 | PPR_2 | 361 | 408 |
| PF01535.19 | PPR | 437 | 463 |
| PF01535.19 | PPR | 466 | 494 |
| PF01535.19 | PPR | 501 | 529 |
| PF01535.19 | PPR | 538 | 563 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.