PH01001981G0080's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G62200 : 5.00E-50
Blast annotation: Putative endonuclease or glycosyl hydrolase
2.Location
Scaffold: PH01001981
Strand: +
| Region | Start | End |
| gene | 58779 | 63717 |
| mRNA | 58779 | 63717 |
| exon | 58779 | 59273 |
| exon | 59381 | 63717 |
| CDS | 59033 | 59273 |
| CDS | 59381 | 61986 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001524 | diphosphomevalonate decarboxylase activity, Peroxisome 6-phosphofructokinase complex, Terpenoid_backbone_biosynthesis RWP-RK Transcription_Regulator(from iTAK) Nin-like Transcription_Regulator(from PlantTFDB) 6-phosphofructokinase activity, GRAS Transcription_Regulator(from PlantTFDB) isoprenoid biosynthetic process, glycolysis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01936.17 | NYN | 10 | 147 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005777 | peroxisome |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.