PH01001984G0080's details annotation
1.Annotation
ICBR annotation: protein phosphatase 2C, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01001984
Strand: +
| Region | Start | End |
| gene | 62069 | 63781 |
| mRNA | 62069 | 63781 |
| exon | 62069 | 62736 |
| exon | 62823 | 63781 |
| CDS | 62546 | 62736 |
| CDS | 62823 | 62847 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001292 | LSD Transcription_Regulator(from PlantTFDB) C2C2-LSD Transcription_Regulator(from iTAK) CAMK_CDPK (from iTAK) vesicle docking involved in exocytosis, endoplasmic reticulum, Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.