PH01001986G0170's details annotation
1.Annotation
ICBR annotation: zinc finger family protein, putative, expressed
Blast result AT1G20110 : 1.50E-26
Blast annotation: RING/FYVE/PHD zinc finger superfamily protein
2.Location
Scaffold: PH01001986
Strand: +
| Region | Start | End |
| gene | 124526 | 129446 |
| mRNA | 124526 | 129446 |
| exon | 124526 | 125451 |
| exon | 125724 | 125742 |
| exon | 126101 | 126166 |
| exon | 126246 | 126356 |
| exon | 127708 | 127741 |
| exon | 127823 | 127896 |
| exon | 128371 | 128469 |
| exon | 128671 | 128752 |
| exon | 129054 | 129446 |
| CDS | 125375 | 125451 |
| CDS | 125724 | 125742 |
| CDS | 126101 | 126166 |
| CDS | 126246 | 126356 |
| CDS | 127708 | 127741 |
| CDS | 127823 | 127896 |
| CDS | 128371 | 128469 |
| CDS | 128671 | 128752 |
| CDS | 129054 | 129223 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01363.20 | FYVE | 33 | 93 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Endocytosis | hepatocyte growth factor-regulated tyrosine kinase sub | ko04144 | K12182 |
| Phagosome | hepatocyte growth factor-regulated tyrosine kinase sub | ko04145 | K12182 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0046872 | metal ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.