PH01001988G0040's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G26110 : 1.00E-104
Blast annotation: decapping 5
2.Location
Scaffold: PH01001988
Strand: -
| Region | Start | End |
| gene | 17039 | 23541 |
| mRNA | 17039 | 23541 |
| exon | 17039 | 17295 |
| exon | 17364 | 17474 |
| exon | 17562 | 17756 |
| exon | 20017 | 20082 |
| exon | 20757 | 21644 |
| exon | 21718 | 21789 |
| exon | 22068 | 22168 |
| exon | 22550 | 23541 |
| CDS | 17125 | 17295 |
| CDS | 17364 | 17474 |
| CDS | 17562 | 17756 |
| CDS | 20017 | 20082 |
| CDS | 20757 | 21644 |
| CDS | 21718 | 21789 |
| CDS | 22068 | 22168 |
| CDS | 22550 | 22712 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12701.6 | LSM14 | 21 | 94 |
| PF09532.9 | FDF | 437 | 535 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.