PH01001988G0310's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G27510 : 5.00E-139
Blast annotation: Protein of unknown function (DUF3506)
2.Location
Scaffold: PH01001988
Strand: +
| Region | Start | End |
| gene | 244266 | 250521 |
| mRNA | 244266 | 250521 |
| exon | 244266 | 246375 |
| exon | 246488 | 246553 |
| exon | 246907 | 247013 |
| exon | 247106 | 247187 |
| exon | 247246 | 248001 |
| exon | 248645 | 248765 |
| exon | 248839 | 248990 |
| exon | 249063 | 249146 |
| exon | 249377 | 249469 |
| exon | 250166 | 250521 |
| CDS | 246034 | 246375 |
| CDS | 246488 | 246553 |
| CDS | 246907 | 247013 |
| CDS | 247106 | 247187 |
| CDS | 247246 | 248001 |
| CDS | 248645 | 248765 |
| CDS | 248839 | 248990 |
| CDS | 249063 | 249146 |
| CDS | 249377 | 249469 |
| CDS | 250166 | 250267 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001498 | mTERF Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12014.7 | DUF3506 | 471 | 599 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.