PH01001994G0160's details annotation
1.Annotation
ICBR annotation: la domain containing protein, expressed
Blast result AT2G43970 : 3.70E-56
Blast annotation: RNA-binding protein
2.Location
Scaffold: PH01001994
Strand: -
| Region | Start | End |
| gene | 130775 | 138362 |
| mRNA | 130775 | 138362 |
| exon | 130775 | 132252 |
| exon | 132479 | 132619 |
| exon | 134841 | 134909 |
| exon | 134997 | 135044 |
| exon | 136228 | 136324 |
| exon | 136423 | 136502 |
| exon | 136613 | 136684 |
| exon | 136912 | 137006 |
| exon | 137120 | 138362 |
| CDS | 131872 | 132252 |
| CDS | 132479 | 132619 |
| CDS | 134841 | 134909 |
| CDS | 134997 | 135044 |
| CDS | 136228 | 136324 |
| CDS | 136423 | 136502 |
| CDS | 136613 | 136684 |
| CDS | 136912 | 137006 |
| CDS | 137120 | 137318 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00076.21 | RRM_1 | 179 | 203 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.