PH01001994G0250's details annotation
1.Annotation
ICBR annotation: inactive receptor kinase At1g27190 precursor, putative, expressed
Blast result AT5G48380 : 0.00E+00
Blast annotation: BAK1-interacting receptor-like kinase 1
2.Location
Scaffold: PH01001994
Strand: +
| Region | Start | End |
| gene | 191246 | 196606 |
| mRNA | 191246 | 196606 |
| exon | 191246 | 194389 |
| exon | 194802 | 196606 |
| CDS | 193571 | 194389 |
| CDS | 194802 | 195803 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000034 | RLK-Pelle_LRR-Xa (from iTAK) fructose_1,6-bisphosphate_1-phosphatase_activity |
| coexpression network | CFinderM000808 | RLK-Pelle_LRR-Xa (from iTAK) peroxisomal membrane, membrane, SBP Transcription_Regulator(from PlantTFDB) protein_import_into_peroxisome_matrix negative_regulation_of_transcription,_DNA-templated ATPase activity, transcription_corepressor_activity nucleoside-triphosphatase activity, |
| coexpression network | CFinderM001007 | RLK-Pelle_LRR-Xa (from iTAK) Terpenoid_backbone_biosynthesis isopentenyl-diphosphate delta-isomerase activity, coproporphyrinogen oxidase activity, porphyrin-containing compound biosynthetic process, transferase activity, transferring phosphorus-containing groups, isoprenoid biosynthetic process, |
| coexpression network | CFinderM001137 | RLK-Pelle_LRR-Xa (from iTAK) coproporphyrinogen oxidase activity, porphyrin-containing compound biosynthetic process, Porphyrin_and_chlorophyll_metabolism Terpenoid_backbone_biosynthesis isoprenoid biosynthetic process, mRNA_surveillance_pathway |
| coexpression network | CFinderM001394 | membrane, RLK-Pelle_LRR-Xa (from iTAK) SBP Transcription_Regulator(from PlantTFDB) ATPase activity, nucleoside-triphosphatase activity, 3'-5' exonuclease activity, nucleobase-containing compound metabolic process, |
| coexpression network | CFinderM001396 | Selenocompound_metabolism Aminoacyl-tRNA_biosynthesis RLK-Pelle_LRR-Xa (from iTAK) tRNA aminoacylation for protein translation, aminoacyl-tRNA ligase activity, methionyl-tRNA aminoacylation, nucleotide binding, methionine-tRNA ligase activity, cytoplasm, |
| coexpression network | CFinderM001442 | GT37 GlycosylTransferases RLK-Pelle_LRR-Xa (from iTAK) cell wall biogenesis, Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis galactoside 2-alpha-L-fucosyltransferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08263.11 | LRRNT_2 | 28 | 67 |
| PF13855.5 | LRR_8 | 123 | 181 |
| PF07714.16 | Pkinase_Tyr | 299 | 570 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0005515 | protein binding |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.