PH01001995G0110's details annotation
1.Annotation
ICBR annotation: Regulator of chromosome condensation domain containing protein, expressed
Blast result AT3G02300 : 0.00E+00
Blast annotation: Regulator of chromosome condensation (RCC1) family protein
2.Location
Scaffold: PH01001995
Strand: +
| Region | Start | End |
| gene | 74069 | 81037 |
| mRNA | 74069 | 81037 |
| exon | 74069 | 75649 |
| exon | 76279 | 76472 |
| exon | 76568 | 76615 |
| exon | 77435 | 77507 |
| exon | 77794 | 77965 |
| exon | 78776 | 79207 |
| exon | 79781 | 79972 |
| exon | 80291 | 81037 |
| CDS | 75397 | 75649 |
| CDS | 76279 | 76472 |
| CDS | 76568 | 76615 |
| CDS | 77435 | 77507 |
| CDS | 77794 | 77965 |
| CDS | 78776 | 79207 |
| CDS | 79781 | 79972 |
| CDS | 80291 | 80369 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001249 | glycerol ether metabolic process, cell redox homeostasis, protein disulfide oxidoreductase activity, electron carrier activity, Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00415.17 | RCC1 | 21 | 75 |
| PF00415.17 | RCC1 | 78 | 127 |
| PF00415.17 | RCC1 | 183 | 241 |
| PF00415.17 | RCC1 | 244 | 296 |
| PF00415.17 | RCC1 | 300 | 357 |
| PF00415.17 | RCC1 | 361 | 409 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.