Annotation of co-expression genes

PH01001995G0390's details annotation

1.Annotation

ICBR annotation: cytochrome P450, putative, expressed

Blast result AT3G30180 : 2.00E-170
Blast annotation: brassinosteroid-6-oxidase 2

2.Location

Scaffold: PH01001995
Strand: +

RegionStartEnd
gene260556265003
mRNA260556265003
exon260556260951
exon261696262017
exon262783262932
exon263047263295
exon263388263474
exon263560263638
exon263729263835
exon263927264051
exon264139265003
CDS260761260951
CDS261696262017
CDS262783262932
CDS263047263295
CDS263388263474
CDS263560263638
CDS263729263835
CDS263927264051
CDS264139264226

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000047isomerase activity,
Brassinosteroid_biosynthesis
carbohydrate metabolic process,
carbohydrate binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00067.21p450211445

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Brassinosteroid biosynthesiscytochrome P450, family 85, subfamily A, polypeptide 2[EC:1.14.13.-]ko00905K12640

10.Gene Ontology

GO AccessionGO Annotation
GO:0005506iron ion binding
GO:0009055electron carrier activity
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037heme binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.