PH01001996G0380's details annotation
1.Annotation
ICBR annotation: Rf1, mitochondrial precursor, putative, expressed
Blast result AT1G12300 : 2.10E-69
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01001996
Strand: -
| Region | Start | End |
| gene | 275207 | 276812 |
| mRNA | 275207 | 276812 |
| exon | 275207 | 275257 |
| exon | 275444 | 276812 |
| CDS | 275241 | 275257 |
| CDS | 275444 | 276812 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13041.5 | PPR_2 | 55 | 102 |
| PF13041.5 | PPR_2 | 126 | 175 |
| PF12854.6 | PPR_1 | 192 | 225 |
| PF13041.5 | PPR_2 | 231 | 279 |
| PF13041.5 | PPR_2 | 301 | 350 |
| PF01535.19 | PPR | 375 | 404 |
| PF13041.5 | PPR_2 | 406 | 454 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.