PH01002002G0170's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G08030 : 5.00E-118
Blast annotation: Protein of unknown function, DUF642
2.Location
Scaffold: PH01002002
Strand: +
| Region | Start | End |
| gene | 110026 | 113282 |
| mRNA | 110026 | 113282 |
| exon | 110026 | 110628 |
| exon | 111218 | 111718 |
| exon | 111800 | 111840 |
| exon | 112353 | 113282 |
| CDS | 110505 | 110628 |
| CDS | 111218 | 111718 |
| CDS | 111800 | 111840 |
| CDS | 112353 | 112643 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04862.11 | DUF642 | 42 | 199 |
| PF04862.11 | DUF642 | 211 | 377 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.