Annotation of co-expression genes

PH01002002G0290's details annotation

1.Annotation

ICBR annotation: CESA2 - cellulose synthase, expressed

Blast result AT5G05170 : 0.00E+00
Blast annotation: Cellulose synthase family protein

2.Location

Scaffold: PH01002002
Strand: -

RegionStartEnd
gene179275185845
mRNA179275185845
exon179275180888
exon180968181318
exon181576181778
exon181937182192
exon182360182572
exon182659182784
exon182891183028
exon183115183460
exon183542183808
exon184118184307
exon184398184497
exon184587184837
exon185152185845
CDS180304180888
CDS180968181318
CDS181576181778
CDS181937182192
CDS182360182572
CDS182659182784
CDS182891183028
CDS183115183460
CDS183542183808
CDS184118184307
CDS184398184497
CDS184587184837
CDS185152185479

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000819katanin_complex
microtubule_severing
cellulose biosynthetic process,
microtubule binding,
cellulose synthase (UDP-forming) activity,
coexpression networkCFinderM001446RLK-Pelle_LRR-III (from iTAK)
membrane,
ion transport,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF14569.5zf-UDP48121
PF03552.13Cellulose_synt3921111

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0016020membrane
GO:0016760cellulose synthase (UDP-forming) activity
GO:0030244cellulose biosynthetic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.