PH01002003G0080's details annotation
1.Annotation
ICBR annotation: BTBN3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed
Blast result AT1G67900 : 4.00E-140
Blast annotation: Phototropic-responsive NPH3 family protein
2.Location
Scaffold: PH01002003
Strand: -
| Region | Start | End |
| gene | 49171 | 52317 |
| mRNA | 49171 | 52317 |
| exon | 49171 | 50229 |
| exon | 50481 | 51734 |
| exon | 51999 | 52068 |
| exon | 52165 | 52317 |
| CDS | 49687 | 50229 |
| CDS | 50481 | 51734 |
| CDS | 51999 | 52068 |
| CDS | 52165 | 52223 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000162 | CAMTA Transcription_Regulator(from PlantTFDB) AUX/IAA Transcription_Regulator(from iTAK) Dof Transcription_Regulator(from PlantTFDB) C2C2-Dof Transcription_Regulator(from iTAK) AGC_RSK-2 (from iTAK) zinc_ion_transmembrane_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03000.13 | NPH3 | 188 | 488 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.