PH01002004G0180's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G24070 : 1.80E-66
Blast annotation: Family of unknown function (DUF566)
2.Location
Scaffold: PH01002004
Strand: +
| Region | Start | End |
| gene | 120589 | 126421 |
| mRNA | 120589 | 126421 |
| exon | 120589 | 120775 |
| exon | 123093 | 124337 |
| exon | 124805 | 124924 |
| exon | 125413 | 125529 |
| exon | 125649 | 125738 |
| exon | 126267 | 126421 |
| CDS | 120668 | 120775 |
| CDS | 123093 | 124337 |
| CDS | 124805 | 124924 |
| CDS | 125413 | 125529 |
| CDS | 125649 | 125738 |
| CDS | 126267 | 126410 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001802 | Alanine,_aspartate_and_glutamate_metabolism cell wall biogenesis, purine nucleotide biosynthetic process, galactoside 2-alpha-L-fucosyltransferase activity, adenylosuccinate synthase activity, WRKY Transcription_Regulator(from PlantTFDB) RNA-dependent DNA replication, Purine_metabolism nucleosome assembly, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04484.11 | QWRF | 296 | 583 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.