Annotation of co-expression genes

PH01002010G0080's details annotation

1.Annotation

ICBR annotation: 1,3-beta-glucan synthase component domain containing protein, expressed

Blast result AT5G13000 : 2.00E-134
Blast annotation: glucan synthase-like 12

2.Location

Scaffold: PH01002010
Strand: +

RegionStartEnd
gene5381757479
mRNA5381757479
exon5381754522
exon5484554945
exon5536555489
exon5557455667
exon5581955998
exon5603256148
exon5626356355
exon5646256526
exon5668056701
exon5682256914
exon5702157085
exon5723957479
CDS5430954522
CDS5484554945
CDS5536555489
CDS5557455667
CDS5581955998
CDS5603256148
CDS5626356355
CDS5646256526
CDS5668056701
CDS5682256914
CDS5702157085
CDS5723957371

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000826dihydrodipicolinate synthase activity,
Lysine_biosynthesis
lysine biosynthetic process via diaminopimelate,
spliceosomal complex,
nuclear mRNA splicing, via spliceosome,
lyase activity,
GT48 GlycosylTransferases
C3H Transcription_Regulator(from PlantTFDB)
rRNA binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
GlycosylTransferasesGT48

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04652.15Vta151178
PF14288.5FKS1_dom1402432

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:00038431,3-beta-D-glucan synthase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.