PH01002010G0130's details annotation
1.Annotation
ICBR annotation: 1,3-beta-glucan synthase component domain containing protein, expressed
Blast result AT5G13000 : 0
Blast annotation: glucan synthase-like 12
2.Location
Scaffold: PH01002010
Strand: +
| Region | Start | End |
| gene | 79673 | 93303 |
| mRNA | 79673 | 93303 |
| exon | 79673 | 81091 |
| exon | 81184 | 81262 |
| exon | 81898 | 82262 |
| exon | 82710 | 83143 |
| exon | 84201 | 84413 |
| exon | 85050 | 85159 |
| exon | 85257 | 85382 |
| exon | 85519 | 85587 |
| exon | 85674 | 85848 |
| exon | 86361 | 86505 |
| exon | 87026 | 87145 |
| exon | 87217 | 87335 |
| exon | 87450 | 87533 |
| exon | 87860 | 87972 |
| exon | 88059 | 88288 |
| exon | 88371 | 88484 |
| exon | 89427 | 89990 |
| exon | 90101 | 90151 |
| exon | 90443 | 90628 |
| exon | 90721 | 90965 |
| exon | 91171 | 91506 |
| exon | 91710 | 91891 |
| exon | 92360 | 92515 |
| exon | 92880 | 93303 |
| CDS | 79958 | 81091 |
| CDS | 81184 | 81262 |
| CDS | 81898 | 82262 |
| CDS | 82710 | 83143 |
| CDS | 84201 | 84413 |
| CDS | 85050 | 85159 |
| CDS | 85257 | 85382 |
| CDS | 85519 | 85587 |
| CDS | 85674 | 85848 |
| CDS | 86361 | 86505 |
| CDS | 87026 | 87145 |
| CDS | 87217 | 87335 |
| CDS | 87450 | 87533 |
| CDS | 87860 | 87972 |
| CDS | 88059 | 88288 |
| CDS | 88371 | 88484 |
| CDS | 89427 | 89990 |
| CDS | 90101 | 90151 |
| CDS | 90443 | 90628 |
| CDS | 90721 | 90965 |
| CDS | 91171 | 91506 |
| CDS | 91710 | 91891 |
| CDS | 92360 | 92515 |
| CDS | 92880 | 92959 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000569 | CMGC_Pl-Tthe (from iTAK) 1,3-beta-D-glucan synthase activity, 1,3-beta-D-glucan synthase complex, membrane, Regulation_of_autophagy |
| coexpression network | CFinderM000584 | membrane, TKL-Pl-6 (from iTAK) TKL-Pl-4 (from iTAK) 1,3-beta-D-glucan synthase complex, (1->3)-beta-D-glucan biosynthetic process, RNA-dependent DNA replication, |
| coexpression network | CFinderM001123 | 1,3-beta-D-glucan synthase activity, (1->3)-beta-D-glucan biosynthetic process, 1,3-beta-D-glucan synthase complex, RNA-dependent DNA replication, membrane, RNA-directed DNA polymerase activity, |
| coexpression network | CFinderM001345 | C3H Transcription_Regulator(from PlantTFDB) 1,3-beta-D-glucan synthase complex, catalase activity, membrane, (1->3)-beta-D-glucan biosynthetic process, Tryptophan_metabolism Glyoxylate_and_dicarboxylate_metabolism Peroxisome RNA-dependent DNA replication, Methane_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13975.5 | gag-asp_proteas | 41 | 128 |
| PF00078.26 | RVT_1 | 252 | 377 |
| PF02364.14 | Glucan_synthase | 708 | 1197 |
| PF02364.14 | Glucan_synthase | 1209 | 1452 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000148 | 1,3-beta-D-glucan synthase complex |
| GO:0003723 | RNA binding |
| GO:0003843 | 1,3-beta-D-glucan synthase activity |
| GO:0003964 | RNA-directed DNA polymerase activity |
| GO:0006075 | (1->3)-beta-D-glucan biosynthetic process |
| GO:0006278 | RNA-dependent DNA replication |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.