PH01002010G0160's details annotation
1.Annotation
ICBR annotation: armadillo/beta-catenin repeat family protein, putative, expressed
Blast result AT1G20780 : 1.80E-67
Blast annotation: senescence-associated E3 ubiquitin ligase 1
2.Location
Scaffold: PH01002010
Strand: -
| Region | Start | End |
| gene | 117586 | 126530 |
| mRNA | 117586 | 126530 |
| exon | 117586 | 119013 |
| exon | 122426 | 123340 |
| exon | 123803 | 124350 |
| exon | 124686 | 124954 |
| exon | 125636 | 126530 |
| CDS | 118966 | 119013 |
| CDS | 122426 | 123340 |
| CDS | 123803 | 124350 |
| CDS | 124686 | 124954 |
| CDS | 125636 | 125919 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04564.14 | U-box | 206 | 280 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000151 | ubiquitin ligase complex |
| GO:0004842 | ubiquitin-protein ligase activity |
| GO:0005488 | binding |
| GO:0005515 | protein binding |
| GO:0016567 | protein ubiquitination |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.