PH01002010G0170's details annotation
1.Annotation
ICBR annotation: N-acetylglucosaminyltransferase I, putative, expressed
Blast result AT4G38240 : 8.00E-101
Blast annotation: alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative
2.Location
Scaffold: PH01002010
Strand: -
| Region | Start | End |
| gene | 127285 | 129711 |
| mRNA | 127285 | 129711 |
| exon | 127285 | 128171 |
| exon | 128417 | 128587 |
| exon | 128660 | 128698 |
| exon | 128789 | 128851 |
| exon | 128999 | 129099 |
| exon | 129362 | 129711 |
| CDS | 128061 | 128171 |
| CDS | 128417 | 128587 |
| CDS | 128660 | 128698 |
| CDS | 128789 | 128851 |
| CDS | 128999 | 129099 |
| CDS | 129362 | 129416 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000131 | GT13 GlycosylTransferases vacuolar_proton-transporting_V-type_ATPase,_V0_domain Golgi membrane, proton-transporting V-type ATPase, V0 domain, |
| coexpression network | CFinderM001745 | GT13 GlycosylTransferases Golgi membrane, mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, N-Glycan_biosynthesis Glycerolipid_metabolism Various_types_of_N-glycan_biosynthesis Glycerophospholipid_metabolism transferase activity, transferring acyl groups, acetylglucosaminyltransferase activity, protein glycosylation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT13 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03071.14 | GNT-I | 14 | 264 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| N-Glycan biosynthesis | alpha-1,3-mannosyl-glycoproteinbeta-1,2-N-acetylglucosaminyltransferase[EC:2.4.1.101] | ko00510 | K00726 |
| Various types of N-glycan biosynthesis | alpha-1,3-mannosyl-glycoproteinbeta-1,2-N-acetylglucosaminyltransferase[EC:2.4.1.101] | ko00513 | K00726 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000139 | Golgi membrane |
| GO:0006486 | protein glycosylation |
| GO:0008375 | acetylglucosaminyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.