PH01002010G0230's details annotation
1.Annotation
ICBR annotation: tumor susceptibility gene 101, putative, expressed
Blast result AT5G13860 : 9.30E-90
Blast annotation: ELCH-like
2.Location
Scaffold: PH01002010
Strand: -
| Region | Start | End |
| gene | 153695 | 156648 |
| mRNA | 153695 | 156648 |
| exon | 153695 | 156648 |
| CDS | 155189 | 156382 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05743.12 | UEV | 46 | 167 |
| PF09454.9 | Vps23_core | 311 | 373 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Endocytosis | ESCRT-I complex subunit TSG101 | ko04144 | K12183 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006464 | cellular protein modification process |
| GO:0015031 | protein transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.