Annotation of co-expression genes

PH01002011G0130's details annotation

1.Annotation

ICBR annotation: alpha-amylase precursor, putative, expressed

Blast result AT1G69830 : 0.00E+00
Blast annotation: alpha-amylase-like 3

2.Location

Scaffold: PH01002011
Strand: -

RegionStartEnd
gene8012593268
mRNA8012593268
exon8012580421
exon8076180898
exon8105181218
exon8166681788
exon8223082479
exon8332783433
exon8445884647
exon8563286263
exon8721287672
exon9017390302
exon9068690805
exon9170991793
exon9186591998
exon9208593268
CDS8036280421
CDS8076180898
CDS8105181218
CDS8166681788
CDS8223082479
CDS8332783433
CDS8445884647
CDS8563286263
CDS8721287672
CDS9017390302
CDS9068690805
CDS9170991793
CDS9186591998
CDS9208592333

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Carbohydrate-Binding_ModulesCBM45
Glycoside_HydrolasesGH13

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00128.23Alpha-amylase567823
PF07821.11Alpha-amyl_C2875929

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0004556alpha-amylase activity
GO:0005509calcium ion binding
GO:0005975carbohydrate metabolic process
GO:0043169cation binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.