Annotation of co-expression genes

PH01002012G0190's details annotation

1.Annotation

ICBR annotation: OsWAK32 - OsWAK receptor-like protein kinase, expressed

Blast result AT1G21230 : 2.00E-103
Blast annotation: wall associated kinase 5

2.Location

Scaffold: PH01002012
Strand: -

RegionStartEnd
gene162488170472
mRNA162488170472
exon162488163692
exon164340164600
exon164763164924
exon167004167468
exon168076170472
CDS162641163692
CDS164340164600
CDS164763164924
CDS167004167468
CDS168076168709

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13947.5GUB_WAK_bind221281
PF00069.24Pkinase519783

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005509calcium ion binding
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups
GO:0030247polysaccharide binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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