Annotation of co-expression genes

PH01002022G0080's details annotation

1.Annotation

ICBR annotation: IBS1, putative, expressed

Blast result AT1G54610 : 1.00E-120
Blast annotation: Protein kinase superfamily protein

2.Location

Scaffold: PH01002022
Strand: -

RegionStartEnd
gene7474784233
mRNA7474784233
exon7474775454
exon7600576077
exon7630876440
exon7652176832
exon7700077056
exon7719777305
exon7757577672
exon7814078367
exon8007880120
exon8064980839
exon8187482191
exon8228282566
exon8320484233
CDS7521775454
CDS7600576077
CDS7630876440
CDS7652176832
CDS7700077056
CDS7719777305
CDS7757577672
CDS7814078367
CDS8007880120
CDS8064980839
CDS8187482191
CDS8228282566
CDS8320483575

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase119324

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.