PH01002028G0330's details annotation
1.Annotation
ICBR annotation: Os3bglu8 - beta-glucosidase, exo-beta-glucansase, high similarity to Os3bglu7, expressed
Blast result AT3G18080 : 0.00E+00
Blast annotation: B-S glucosidase 44
2.Location
Scaffold: PH01002028
Strand: +
| Region | Start | End |
| gene | 214474 | 221283 |
| mRNA | 214474 | 221283 |
| exon | 214474 | 215240 |
| exon | 215806 | 215864 |
| exon | 216296 | 216371 |
| exon | 216474 | 216545 |
| exon | 216624 | 216711 |
| exon | 218916 | 219159 |
| exon | 219945 | 220060 |
| exon | 220152 | 220408 |
| exon | 220456 | 220487 |
| exon | 220604 | 220706 |
| exon | 220797 | 221283 |
| CDS | 214988 | 215240 |
| CDS | 215806 | 215864 |
| CDS | 216296 | 216371 |
| CDS | 216474 | 216545 |
| CDS | 216624 | 216711 |
| CDS | 218916 | 219159 |
| CDS | 219945 | 220060 |
| CDS | 220152 | 220408 |
| CDS | 220456 | 220487 |
| CDS | 220604 | 220706 |
| CDS | 220797 | 221239 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000697 | Valine,_leucine_and_isoleucine_biosynthesis Valine,_leucine_and_isoleucine_degradation |
| coexpression network | CFinderM000861 | Valine,_leucine_and_isoleucine_degradation Valine,_leucine_and_isoleucine_biosynthesis Pantothenate_and_CoA_biosynthesis branched chain family amino acid metabolic process, AGC_RSK-2 (from iTAK) RLK-Pelle_RLCK-VIIa-2 (from iTAK) iron-sulfur cluster assembly, branched-chain-amino-acid transaminase activity, |
| coexpression network | CFinderM001708 | Valine,_leucine_and_isoleucine_degradation Valine,_leucine_and_isoleucine_biosynthesis branched chain family amino acid metabolic process, branched-chain-amino-acid transaminase activity, Pantothenate_and_CoA_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00232.17 | Glyco_hydro_1 | 46 | 510 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.