Annotation of co-expression genes

PH01002028G0390's details annotation

1.Annotation

ICBR annotation: Os3bglu7 - beta-glucosidase, exo-beta-glucanse, expressed

Blast result AT3G18080 : 4.00E-147
Blast annotation: B-S glucosidase 44

2.Location

Scaffold: PH01002028
Strand: +

RegionStartEnd
gene249968256411
mRNA249968256411
exon249968251045
exon253910253981
exon254070254157
exon254519254762
exon255158255273
exon255365255582
exon255672255703
exon255821255923
exon256026256411
CDS250670251045
CDS253910253981
CDS254070254157
CDS254519254762
CDS255158255273
CDS255365255582
CDS255672255703
CDS255821255923
CDS256026256300

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00078.26RVT_127125
PF00232.17Glyco_hydro_1100505

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003723RNA binding
GO:0003824catalytic activity
GO:0003964RNA-directed DNA polymerase activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process
GO:0006278RNA-dependent DNA replication

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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