PH01002030G0160's details annotation
1.Annotation
ICBR annotation: diacylglycerol kinase, putative, expressed
Blast result AT5G23450 : 5.00E-166
Blast annotation: long-chain base (LCB) kinase 1
2.Location
Scaffold: PH01002030
Strand: +
| Region | Start | End |
| gene | 135083 | 143641 |
| mRNA | 135083 | 143641 |
| exon | 135083 | 136766 |
| exon | 136825 | 136885 |
| exon | 137052 | 137254 |
| exon | 138688 | 138781 |
| exon | 138856 | 138893 |
| exon | 139401 | 139478 |
| exon | 141341 | 141440 |
| exon | 141594 | 142552 |
| exon | 142960 | 143641 |
| CDS | 136359 | 136766 |
| CDS | 136825 | 136885 |
| CDS | 137052 | 137254 |
| CDS | 138688 | 138781 |
| CDS | 138856 | 138893 |
| CDS | 139401 | 139478 |
| CDS | 141341 | 141440 |
| CDS | 141594 | 142552 |
| CDS | 142960 | 143112 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000724 | HSF Transcription_Regulator(from PlantTFDB) metabolic process, sterol_24-C-methyltransferase_activity Steroid_biosynthesis protein kinase C-activating G-protein coupled receptor signaling pathway, steroid biosynthetic process, diacylglycerol kinase activity, NAD+ kinase activity, |
| coexpression network | CFinderM001062 | HSF Transcription_Regulator(from PlantTFDB) NAD+ kinase activity, diacylglycerol kinase activity, protein kinase C-activating G-protein coupled receptor signaling pathway, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00781.23 | DAGK_cat | 197 | 269 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003951 | NAD+ kinase activity |
| GO:0004143 | diacylglycerol kinase activity |
| GO:0007205 | protein kinase C-activating G-protein coupled receptor signaling pathway |
| GO:0008152 | metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.