Gene details

Annotation of co-expression genes

PH01002033G0310's details annotation

1.Annotation

ICBR annotation: shikimate/quinate 5-dehydrogenase, putative, expressed

Blast result AT5G52810 : 1.00E-49
Blast annotation: NAD(P)-binding Rossmann-fold superfamily protein

2.Location

Scaffold: PH01002033
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM001343	Golgi-associated vesicle, binding, Terpenoid_backbone_biosynthesis guanyl-nucleotide exchange factor activity, COPI vesicle coat, membrane coat,
coexpression network	CFinderM001542	guanyl-nucleotide exchange factor activity, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, small GTPase mediated signal transduction, signal transduction, terpenoid biosynthetic process, cellular component organization, Terpenoid_backbone_biosynthesis actin cytoskeleton organization, intracellular,
coexpression network	CFinderM001575	protein methylation, ubiquitin thiolesterase activity, ubiquitin-dependent protein catabolic process, methyltransferase activity,
coexpression network	CFinderM001838	ubiquitin-dependent protein catabolic process, ubiquitin thiolesterase activity,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF02423.14	OCD_Mu_crystall	25	203

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
null	null

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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