PH01002036G0260's details annotation
1.Annotation
ICBR annotation: OsRhmbd10 - Putative Rhomboid homologue, expressed
Blast result AT3G07950 : 2.70E-64
Blast annotation: rhomboid protein-related
2.Location
Scaffold: PH01002036
Strand: +
| Region | Start | End |
| gene | 206350 | 210503 |
| mRNA | 206350 | 210503 |
| exon | 206350 | 206886 |
| exon | 207352 | 207470 |
| exon | 207896 | 207956 |
| exon | 208309 | 208475 |
| exon | 208839 | 208953 |
| exon | 209085 | 209287 |
| exon | 209378 | 209488 |
| exon | 209740 | 210503 |
| CDS | 206812 | 206886 |
| CDS | 207352 | 207470 |
| CDS | 207896 | 207956 |
| CDS | 208309 | 208475 |
| CDS | 208839 | 208953 |
| CDS | 209085 | 209287 |
| CDS | 209378 | 209488 |
| CDS | 209740 | 209836 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001154 | clathrin_coat RLK-Pelle_LysM (from iTAK) clathrin_coat_assembly Trihelix Transcription_Regulator(from PlantTFDB) cellular amino acid biosynthetic process, RLK-Pelle_SD-2b (from iTAK) clathrin_binding 1-phosphatidylinositol_binding |
| coexpression network | CFinderM001162 | clathrin_coat_assembly clathrin_coat RLK-Pelle_SD-2b (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08551.9 | DUF1751 | 63 | 161 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004252 | serine-type endopeptidase activity |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.